Well, I don't think there are any methodological conflicts either. As for those social conflicts, those aren't conflicts—in my opinion—between science and religion. They're conflicts between Christians and atheists or Christians and secularists: Christians want to do things one way, secularists want to do things another way. But that's not a science/religion conflict at all. You might as well say it's a science/secularism conflict. In each case, each group wants to do science and then use it in a certain way.
Pardi, Paul (2011-12-13). Interview with Alvin Plantinga on Where the Conflict Really Lies. Philosophy News.